Recent Publications - 2011/12
Below is a list of all recent publications by GMI staff organized by group. Simply click on the journal reference links to view or download a copy of the relevant paper (where available). For a more complete list of all group publications please visit the Publications Page.
Table of Contents
Busch Group
Iyer-Pascuzzi AS, Jackson T, Cui H, Petricka JJ, Busch W, Tsukagoshi H, Benfey PN (2011) Cell identity regulators link development and stress responses in the Arabidopsis root. Developmental Cell 21:770-782.
Greb Group
Agusti J, Greb T (2012) Going with the wind - adaptive dynamics of plant secondary meristems. Mechanisms of Development online:9 June 2012
Agusti J, Herold S, Schwarz M, Sanchez P, Ljung K, Dun EA, Brewer PB, Beveridge CA, Sieberer T, Sehr EM, Greb T (2011) Strigolactone signaling is required for auxin-dependent stimulation of secondary growth in plants. PNAS 108:20242-20247.
Agusti J, Lichtenberger R, Schwarz M, Nehlin L, Greb T (2011) Characterization of transcriptome remodeling during cambium formation identifies MOL1 and RUL1 as opposing regulators of secondary growth. PLoS Genet 7:e1001312.
Brandt R, Salla-Martret M, Bou-Torrent J, Musielak T, Stahl M, Lanz C, Ott F, Schmid M, Greb T, Schwarz M, Choi S-B, Quint M, Palauqui J-C, Martinez-Garcia J, Wenkel S (2012) Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses. Plant J online:12 May 2012
Marshall A, Aalen RB, Audenaert D, Beeckman T, Broadley MR, Butenko MA, Caño-Delgado AI, de Vries S, Dresselhaus T, Felix G, Graham NS, Foulkes J, Granier C, Greb T, Grossniklaus U, Hammond JP, Heidstra R, Hodgman C, Hothorn M, Inzé D, Østergaard L, Russinova E, Simon R, Skirycz A, Stahl Y, Zipfel C, De Smet I (2012) Tackling water stress: RECEPTOR-LIKE KINASES to the rescue. The Plant Cell online: 12 June 2012.
Rasmussen A, De Cuyper C, Brewer PB, Herold S, Agusti J, Geelen D, Greb T, Goormachtig S, Beeckman T, Beveridge CA (2012) Strigolactones suppress adventitious rooting in Arabidopsis and pea. Plant Physiol 158:1976-1987.
Sanchez P, Nehlin L, Greb T (2012) From thin to thick – major transitions during stem development. Trends Plant Sci 17:113-121.
Suer S, Agusti J, Sanchez P, Schwarz M, Greb T (2011) WOX4 imparts auxin responsiveness to cambium cells in Arabidopsis. Plant Cell 23:3247-3259.
Jonak Group
Dal Santo S, Stampfl H, Krasensky J, Kempa S, Gibon Y, Petutschnig E, Rozhon W, Heuck A, Clausen T, Jonak C (2012) Stress-induced GSK3 regulates the redox stress response by phosphorylating glucose-6-phosphate dehydrogenase in Arabidopsis. Plant Cell online: 10 Aug 2012.
Gudesblat GE, Schneider-Pizón J, Betti C, Mayerhofer J, Vanhoutte I, van Dongen W, Boeren S, Zhiponova M, de Vries S, Jonak C, Russinova E (2012) SPEECHLESS integrates brassinosteroid and stomata signalling pathways. Nature Cell Biology 14:548-554.
Hauser MT, Aufsatz W, Jonak C, Luschnig C (2011) Transgenerational epigenetic inheritance in plants. Biochim Biophys Acta 1809:459-468.
Krasensky J, Jonak C (2012) Drought, salt and temperature stress-induced metabolic rearrangements and regulatory networks. J Exp Bot 63:1593-1608.
Riehs-Kearnan N, Gloggnitzer J, Dekrout B, Jonak C, Riha K (2012) Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response. Nucleic Acids Res online: 29 Feb 2012.
Mittelsten Scheid Group
Förster A, Dinh H, Sedman L, Wohlrab B, Mittelsten Scheid O (2011) Genetic rearrangements can modify chromatin features at epialleles. PLoS Genet 7:e1002331.
Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O (2011) Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biol 9:24.
Pecinka A, Mittelsten Scheid O (2012) Stress-induced chromatin changes: a critical view on their heritability. Plant Cell Physiol 53:808-808.
Nordborg Group
Anastasio AE, Platt A, Horton M, Grotewold E, Scholl R, Borevitz JO, Nordborg M, Bergelson J (2011) Source verification of misidentified Arabidopsis thaliana accessions. Plant J 67:554-566.
Fournier-Level A, Korte A, Cooper MD, Nordborg M, Schmitt J, Wilczek AM (2011) A map of local adaptation in Arabidopsis thaliana. Science 334:86-89.
Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J (2012) Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nat Genet 44:212-216.
Hu TT, Pattyn P, Bakker EG, Cao J, Cheng J-F, Clark RM, Fahlgen N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagl M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KFX, van der Peer Y, Grigoriev IV, Nordborg M, Weigel D, Guo Y-L (2011) The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics 43:476-481.
Huang YS, Horton M, Vilhjálmsson BJ, Seren Ü, Meng D, Meyer C, Amer MA, Borevitz JO, Bergelson J, Nordborg M (2011) Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies. Database 2011: doi:10.1093/database/bar014.
Long Q, Jeffares DC, Zhang Q, Ye K, Nizhynska V, Ning Z, Tyler-Smith C, Nordborg M (2011) PoolHap: inferring haplotype frequencies from pooled samples by next-generation sequencing. PLoS ONE 6:e15292.
Segura V, Vilhjálmsson B, Platt A, Korte A, Seren Ü, Long Q, Nordborg M (2012) An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nat Genet online: 17 June 2012.
Seren Ü , Vilhjálmsson BJ, Horton MW, Meng D, Forai P, Huang YS, Long Q, Segura V, Nordborg M (2012) GWAPP: A Web Application for Genome-Wide Association Mapping in Arabidopsis. Plant Cell Online, December 2012 tpc.112.108068
Strange A, Li P, Lister C, Anderson J, Warthmann N, Shindo C, Irwin J, Nordborg M, Dean C (2011) Major-effect alleles at relatively few loci underlie vernalization and flowering variation in Arabidopsis accessions. PLoS One 6:e19949.
Wolff P, Weinhofer I, Seguin J, Roszak P, Beisel C, Donoghue M, Spillane C, Nordborg M, Rehmsmeier M, Köhler C (2011) High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis endosperm. PLoS Genet 7:e1002126.
Riha Group
Riehs-Kearnan N, Gloggnitzer J, Dekrout B, Jonak C, Riha K (2012) Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response. Nucleic Acids Res online: 29 Feb 2012.
Tamaru Group
Adhvaryu KK, Berge E, Tamaru H, Freitag M, Selker EU (2011) Substitutions in the amino-terminal tail of Neurospora histone H3 have varied effects on DNA methylation. PLoS Genet 7:e1002423.
Schoft V, Chumak N, Choi Y, Hannon M, Garcia-Aguilar M, Machlicova A, Slusarz L, Mosiolek M, Park J-S, Park G, Fischer RL, Tamaru H (2011) Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte. Proc Natl Acad Sci USA 108:8042-8047.
