2012

Publications

Brandt R, Salla-Martret M, Bou-Torrent J, et al. (2012) Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses. Plant J 72(1):31-42.

Busch W, Moore BT, Martsberger B, et al. (2012)  A microfluidic device and computational platform for high-throughput live imaging of gene expression. Nat Methods 9(11): 1101-6.

Chao DY, Silva A, Baxter I, et al. (2012) Genome-Wide Association Studies Identify Heavy Metal ATPase3 as the Primary Determinant of Natural Variation in Leaf Cadmium in Arabidopsis thaliana. PLoS Genet 8(9):e1002923.

Dal Santo S, Stampfl H, Krasensky J, et al. (2012) Stress-induced GSK3 regulates the redox stress response by phosphorylating glucose-6-phosphate dehydrogenase in Arabidopsis. Plant Cell 24(8):3380-92.

Dinh HQ, Dubin M, Sedlazeck FJ, et al. (2012) Advanced methylome analysis after bisulfite deep sequencing: An example in Arabidopsis. PLoS ONE 7: e41528.

Gudesblat GE, Schneider-Pizón J, Betti C, et al. (2012) SPEECHLESS integrates brassinosteroid and stomata signalling pathways. Nat Cell Biol 14(5):548-54.

Gutzat R, Mittelsten Scheid O (2012) Epigenetic responses to stress: triple defense? Curr Opin Plant Biol 15:1–6.

Horton MW, Hancock AM, Huang YS, et al. (2012) Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nat Genet 44(2):212-6.

Ibarra C, Feng X, Schoft VK, et al. (2012) Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes. Science 337(6100):1360-4.

Kalyna M, Simpson CG, Syed NH, et al. (2012). Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidosis. Nucleic Acids Res 40:(6) 2454-69.

Kazda A, Zellinger B, Rössler M, et al. (2012) Chromosome end protection by blunt-ended telomeres. Genes Dev 26:1703-13.

Korte A, Vilhjálmsson B, Segura V, et al. (2012) A mixed-model approach for genome-wide association studies of correlated traits in structured populations. Nat Genet 44(9):1066–71.

Krasensky J, Jonak C (2012) Drought, salt and temperature stress-induced metabolic rearrangements and regulatory networks. J Exp Bot 63:1593-1608.

Lee TF, Gurazada SG, Zhai J, et al. (2012). RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. Epigentics 7(7):781-95.

Lorković Z (2012) MORC proteins and epigenetic regulation. Plant Signal Behav 7(12).

Lorković Z, Naumann U, Matzke AJM, et al. (2012) Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana. Curr Biol 22:933-8.

Marshall A, Aalen RB, Audenaert D, et al. (2012) Tackling drought stress: RECEPTOR-LIKE KINASES present new approaches. Plant Cell 24(6):2262-78.

Pecinka A, Mittelsten Scheid O (2012) Stress-induced chromatin changes: a critical view on their heritability. Plant Cell Physiol 53:801-8.

Platzer A, Nizhynska V, Long Q (2012) TE-Locate: A Tool to Locate and Group Transposable Element Occurrences Using Paired-End Next-Generation Sequencing Data. Biology 1(2):395-410.

Rasmussen A, De Cuyper C,  Brewer PB, et al. (2012) Strigolactones suppress adventitious rooting in Arabidopsis and pea. Plant Physiol 158(4): 1976-87.

Riehs-Kearnan N, Gloggnitzer J, Dekrout B, et al. (2012) Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response. Nucleic Acids Res 40 (12):5615-24.

Sanchez P, Nehlin L, Greb T (2012) From thin to thick – major transitions during stem development. Trends Plant Sci 17(2):113-121.

Sasaki T, Naumann U, Forai P, et al. (2012) Unusual Case of Apparent Hypermutation in Arabidopsis thaliana. Genetics 192(4):1271-80.

Segura V, Vilhjálmsson B, Platt A, et al. (2012) An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nat Genet 44(7): 825-30.

Seren Ü , Vilhjálmsson BJ, Horton MW, et al. (2012) GWAPP: A Web Application for Genome-Wide Association Mapping in Arabidopsis. Plant Cell 24(12):4793-805.

Vilhjálmsson BJ, Nordborg M (2012) The nature of confounding in genome-wide association studies. Nat Rev Genet 14(1):1-2.

Voigt-Zielinski ML, Piwczyński M, Sharbel TF (2012) Differential effects of polyploidy and diploidy on fitness of apomictic Boechera. Sex. Plant Reprod. 25(2):97-109.

Yáñez-Cuna JO, Dinh HQ, Kvon EZ, et al. (2012) Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding. Genome Res 22(10):2018-30.

You W, Tyczewska A, Spencer M, et al. (2012) Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana. BMC Plant Biol 12:51.

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