2014

Publications

Baubec T, Finke A, Mittelsten Scheid O, et al. (2014) Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO Rep 15(4):446–52.

Belkhadir Y, Yang L, Hetzel J, et al. (2014) The growth–defense pivot: crisis management in plants mediated by LRR-RK surface receptors. Trends Biochem Sci 39(10):447-56.

Cavrak VV, Lettner N, Jamge S, et al. (2014) How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation. PLoS Genet 10(1): e1004115.

Decelle J, Romac S, Sasaki E, et al. (2014) Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing. PLoS ONE 9(8):e104297.

Derboven E, Ekker H, Kusenda B, et al. (2014) Role of STN1 and DNA polymerase alpha in telomere stability and genome-wide replication in Arabidopsis. PLoS Genet 10(10):e1004682.

Fulcher N, Derboven E, Valuchova S, et al. (2014) If the cap fits, wear it: an overview of telemeric structures over evolution. Cell Mol Life Sci 71(5):847-65.

Gloggnitzer J, Akimcheva S, Srinivasan A, et al. (2014) Nonsense-Mediated mRNA Decay Modulates Immune Receptor Levels to Regulate Plant Antibacterial Defense. Cell Host Microbe 16(3):376-90.

Gohring J, Fulcher N, Schilcher K, et al. (2014) Suitable transfection methods for single particle tracing in plant suspension cells. Plant Methods 10(15).

Horton MW, Bodenhausen N, Beilsmith K, et al. (2014) Genome-wide association study of Arabidopsis thaliana leaf microbial community. Nat Commun 5:5320.

Huber CD, Nordborg M, Hermisson J, et al. (2014) Keeping it Local: Evidence for Positive Selection in Swedish Arabidopsis thaliana. Mol Biol Evol 31(11): 3026-39.

Janusch I, Kropatsch WG, Busch W (2014) Reeb graph based examination of root development. Proceedings of the 19th Computer Vision Winter Workshop: 43-50.

Janusch I, Kropatsch WG, Busch W (2014) Topological image analysis and (normalised) representations for plant phenotyping. 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing: 579-86.

Juraniec M, Lequeux H, Hermans C, et al. (2014) Towards the discovery of novel genetic component involved in stress resistance in Arabidopsis thaliana. New Phytologist 201(3): 810-824.

Karasov TL, Horton MW, Bergelson J (2014) Genomic variability as a driver of plant-pathogen coevolution? Curr Opin Plant Biol 18(24-30).

Kawashima T, Berger F (2014) Epigenetic reprogramming in plant sexual reproduction. Nat Rev Genet 15(9): 613-24.

Kawashima T, Maruyama D, Shagirov M, et al. (2014) Dynamic F-actin movement is essential for fertilization in Arabidopsis thaliana. eLife 2014;3:e04501.

Krasensky J, Broyart C, Rabanal FA, et al. (2014). The redox-sensitive chloroplast trehalose-6-phosphate phosphatase AtTPPD regulates salt stress tolerance. Antioxid Redox Signal 21(9):1289-304.

Li P, Filiault D, Box MS, et al. (2014) Multiple FLC haplotypes defined by independent cis-regulatory variation underpin life history diversity in Arabidopsis thaliana. Genes Dev 28(15): 1635-40.

Meijón M, Satbhai SB, ..., Busch W (2014) Genome-wide association study using cellular traits identifies a new regulator of root development in Arabidopsis. Nat Genet 46(1):77-81.

Mérai Z, Chumak N, García-Aguilara M, et al. (2014) The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes. Proc Natl Acad Sci USA 111(45): 16166-71.

Nie X, Wang H, Li J, et al. (2014) The HIRA complex that deposits the histone H3.3 is conserved in Arabidopsis and facilitates transcriptional dynamics. Biol Open 3(9):794-802.

Ovečka M, Takač T, Komis G, et al. (2014) Salt-induced subcellular kinase relocation and seeding susceptibility caused by overexpression of Medicago SIMKK in Arabidopsis. J Exp Bot 65(9): 2335–50.

Pikaard CS, Mittelsten Scheid O (2014) Epigenetic regulation in plants. Cold Spring Harb Perspect Biol 6(12): a019315.

Plecenikova A, Slaninova M, Riha K (2014) Characterization of DNA repair deficient strains of Chlamydomonas reinhardtii generated by insertional mutagenesis. PLoS ONE 9(8): e105482.

Ristova D, Busch W (2014) Natural variation of root traits: from development to nutrient uptake. Plant Physiol 166(2): 518-27.

Rozhon W, Wang W. Berthiller F, et al. (2014) Bikinin-like inhibitors targeting GSK3/Shaggy-like kinases: characterisation of novel compounds and elucidation of their catabolism in planta. BMC Plant Biol 14:172.

Sasaki T, Lee TF, Liao WW, et al. (2014) Distinct and concurrent pathways of Pol II- and Pol IV-dependent siRNA biogenesis at a repetitive trans-silencer locus in Arabidopsis thaliana. Plant J 79(1):127-38.

Sasaki T, Lorkovic ZJ, Liang SC, et al. (2014) The ability to form homodimers is essential for RDM1 to function in RNA-directed DNA methylation. PLoS One 9(2): e88190.

Schatlowski N, Wolff P, Santos-Gonzalez J, et al. (2014) Hypomethylated pollen bypasses the interploidy hybridization barrier in Arabidopsis. Plant Cell 26(9): 3556-68.

Schuster C, Gaillochet C, Medzihradszky A, et al. (2014) A Regulatory Framework for Shoot Stem Cell Control Integrating Metabolic, Transcriptional, and Phytohormone Signals. Dev Cell 28(4): 438-49.

Schweighofer A, Shubchynskyy V, Kazanaviciute V et al. (2014) Bimolecular fluorescent complementation (BiFC) by MAP kinases and MAPK phosphatases. Methods Mol Biol 1171:147-58.

Slovak R, Göschl C, ..., Busch W (2014) Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis. Plant Cell 26(6): 2390-403.

Sozzani R, Busch W, Spalding EP, et al. (2014) Advanced imaging techniques for the study of plant growth and development. Trends Plant Sci 19(5):304–10.

Stanko V, Giuliani C, Retzer K, et al. (2014)  Timing Is Everything: Highly Specific and Transient Expression of a MAP Kinase Determines Auxin-Induced Leaf Venation Patterns in Arabidopsis. Mol Plant 7(11):1637-52.

Svardal H, Rueffler C, Doebeli M (2014) Organismal complexity and the potential for evolutionary diversification. Evolution 68(11):3248-59.

Tanaka S, Brefort T, Neidig N, et al. (2014) A secreted Ustilago maydis effector promotes virulence by targeting anthocyanin biosynthesis in maize. Elife 2014(3):e01355.

Vashisht D, Nodine MD (2014) MicroRNA functions in plant embryos. Biochem Soc Trans 42(2):352–7.

Waidmann S, Kusenda B, Mayerhofer J, et al. (2014) A DEK Domain-Containing Protein Modulates Chromatin Structure and Function in Arabidopsis. Plant Cell 26(11): 4328-44.

Yelagandula R, Stroud H, Holec S, et al. (2014) The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis. Cell 158(1): 98-109.

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