2017

Publications

Balao F, Trucchi E, Wolfe T, et al. (2017) Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima. Mol Ecol 26(14):3649-62.

Barbez E, Dünser K, ..., Busch W (2017) Auxin steers root cell expansion via apoplastic pH regulation in Arabidopsis thaliana. Proc Natl Acad Sci USA 114(24):4884-93.

Barbez F, Kleine-Vehn J, Barbez E (2017) Low-Cost Microprocessor-Controlled Rotating Stage for Medium-Throughput Time-Lapse Plant Phenotyping. Methods Mol Biol 1497:37-45.

Becker C (2017) Paternal effects: Like father, like son. eLife 2017;6:e25669.

Bente H and Mittelsten Scheid O (2017) Epigenetic contribution to diversification. Proc Natl Acad Sci USA 114(14):3558-60.

Bosch, J. and Djamei, A. (2017). Isolation of Ustilago bromivora Strains from Infected Spikelets through Spore Recovery and Germination. Bio-protocol 7(14): e2392.

Catoni M, Griffiths J, Becker C, et al. (2017) DNA sequence properties that predict susceptibility to epiallelic switching. EMBO J 36(5):617-28.

Daccord N, Celton JM, Linsmith G, et al. (2017) High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nat Genet 49(7):1099-106.

Doblas VG, Smakowska-Luzan E, Fujita S, et al. (2017) Root diffusion barrier control by a vasculature-derived peptide binding to the SGN3 receptor. Science 355(6322):280-4.

Filiault DL, Seymour DK, Maruthachalam R, et al. (2017) The Generation of Doubled Haploid Lines for QTL Mapping. Methods Mol Biol. 1610:39-57.

Giovannetti M, Małolepszy A, ..., Busch W (2017) Large-Scale Phenotyping of Root Traits in the Model Legume Lotus japonicus. Methods Mol Biol. 1610:155-167.

Hagmann J, Becker C (2017) Assessing Distribution and Variation of Genome-Wide DNA Methylation Using Short-Read Sequencing. Methods Mol Biol. 1610:61-72.

Ikeda Y, Pélissier T, Bourguet P, et al. (2017) Arabidopsis proteins with a transposon-related domain act in gene silencing. Nat Commun. 8:15122.

Imprialou M, Kahles A, Steffen JG, et al. (2017) Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics 205(4):1425-41.

Ingouff M, Selles B, Michaud C, et al. (2017) Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM. Genes Dev 31(1):72-83.

Kujirai T, Machida S, Osakabe A, et al. (2017) Influence of polynucleosome preparation methods on sedimentation velocity analysis of chromatin. J Biochem 161(4):381-8.

Lee CR, Svardal H, Farlow A, et al. (2017) On the post-glacial spread of human commensal Arabidopsis thaliana. Nat Comm 8:14458.

Lorković Z, Park C, Goiser M, et al. (2017) Compartmentalization of DNA Damage Response between Heterochromatin and Euchromatin Is Mediated by Distinct H2A Histone Variants. Curr Biol 27(8):1192-9.

Lozano-Duran R and Belkhadir Y. (2017) A technical framework for studying the signaling nexus of brassinosteroids and immunity. Methods Mol Biol 1564:49-61

Lutzmayer S, Enugutti B, Nodine M (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data. Sci Reports 7:5913.

Nikitaki Z, Pavlopoulou A, Holá M, et al. (2017) Bridging Plant and Human Radiation Response and DNA Repair through an In Silico Approach. Cancers (Basel) 9(6):E65.

Possart A, Xu T, Paik I, et al. (2017) Characterization Of Phytochrome Interacting Factors From The Moss Physcomitrella Patens Illustrates Conservation Of Phytochrome Signaling Modules In Land Plants. Plant Cell 29(2):310-30.

Rabanal FA, Mandáková T, Soto-Jiménez LM, et al. (2017) Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana. Genome Biol. 18(1):75.

Rabanal FA, Nizhynska V, Mandáková T, et al. (2017) Unstable Inheritance of 45S rRNA Genes in Arabidopsis. G3 7(4):1201-9.

Ristova D, Busch W (2017) Genome-Wide Association Mapping of Root Traits in the Context of Plant Hormone Research. Methods Mol Biol 1497:47-55.

Satbhai SB, Göschl C, Busch W (2017) Automated High-Throughput Root Phenotyping of Arabidopsis thaliana Under Nutrient Deficiency Conditions. Methods Mol Biol. 1610:135-153.

Satbhai SB, Setzer C, ..., Busch W (2017) Natural allelic variation of FRO2 modulates Arabidopsis root growth under iron deficiency. Nat Commun 8:15603.

Schon M and Nodine M (2017) Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Datasets. Plant Cell 29(4):608-17.

Seymour D and Becker C (2017) The causes and consequences of DNA methylome variation in plants. Curr Opin Plant Biol 36:56-63.

Stegmann M, Monaghan J, Smakowska-Luzan E, et al. (2017) The receptor kinase FER is a RALF-regulated scaffold controlling plant immune signaling. Science 355(6322):287-9.

Stoeva D, Göschl C, ..., Busch W (2017) Long-Term Confocal Imaging of Arabidopsis thaliana Roots for Simultaneous Quantification of Root Growth and Fluorescent Signals. Methods Mol Biol. 1610:169-183.

Tsuchimatsu T, Goubet PM, Gallina S, et al. (2017) Patterns of polymorphism at the self-incompatibility locus in 1,083 Arabidopsis thaliana genomes. Mol Biol Evol [epub].

Vad V, Cedrim D, Busch W, et al. (2017) Generalized box-plot for root growth ensembles. BMC Bioinformatics 18(Suppl 2):65-80.

Valuchova S, Fulnecek J, Prokop Z, et al. (2017) Protection of Arabidopsis blunt-ended telomeres is mediated by a physical association with the Ku heterodimer. Plant Cell 29(6):1533-45.

Wallner ES, López-Salmerón V, Belevich I, et al. (2017) Strigolactone- and Karrikin-Independent SMXL Proteins Are Central Regulators of Phloem Formation. Curr Biol 27(8):1241-7.

Wollmann H, Stroud H, Yelagandula R, et al. (2017) The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Genome Biol 18(1):94.

Yelagandula R, Osakabe A, Axelsson E, et al. (2017) Genome-Wide Profiling of Histone Modifications and Histone Variants in Arabidopsis thaliana and Marchantia polymorpha. Methods Mol Biol. 1610:93-106.

Yu Novikova P, Tsuchimatsu T, Simon S, et al. (2017) Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica. Mol Biol Evol 34(4):957-68.

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