Publications

Frederic Berger

2017

Bowman JL, Kohchi T, Yamato KT et al. (2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell [epub].

Ingouff M, Selles B, Michaud C, et al. (2017) Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM. Genes Dev 31(1):72-83.

Jiang D and Berger F (2017) DNA replication-coupled histone modification maintains Polycomb gene silencing in plants. Science [epub].

Lorković Z, Park C, Goiser M, et al. (2017) Compartmentalization of DNA Damage Response between Heterochromatin and Euchromatin Is Mediated by Distinct H2A Histone Variants. Curr Biol 27(8):1192-9.

Lorković ZJ, Berger F (2017) Heterochromatin and DNA damage repair: use different histone variants and relax. Nucleus [epub].

Motomura K, Kawashima T, Berger F (2017) A pharmacological study of Arabidopsis cell fusion between the persistent synergid and endosperm. J Cell Sci [epub].

Susaki D, Maruyama D, Yelagandula R, et al. (2017) Live-Cell Imaging of F-Actin Dynamics During Fertilization in Arabidopsis thaliana. Methods Mol Biol 1668:47-54.

Wollmann H, Stroud H, Yelagandula R, et al. (2017) The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Genome Biol 18(1):94.

Yelagandula R, Osakabe A, Axelsson E, et al. (2017) Genome-Wide Profiling of Histone Modifications and Histone Variants in Arabidopsis thaliana and Marchantia polymorpha. Methods Mol Biol. 1610:93-106.

2016

Berger F, Bowman JL, Kohchi T (2016) Marchantia. Curr Biol 26(5):R186-7.

Berger F, Geyer PK (2016) Editorial overview: Genome architecture and expression: Connecting genome composition and nuclear architecture with function. Curr Opin Genet Dev 37:iv-vi.

Jiang D, Berger F (2016) Histone variants in plant transcriptional regulation. Biochim Biophys Acta 1860(1):123-30.

Kimata Y, Higaki T, Kawashima T, et al. (2016) Cytoskeleton dynamics control the first asymmetric cell division in Arabidopsis zygote. Proc Natl Acad Sci USA 113(49):14157-62.

Motomura K, Berger F, Kawashima T, et al (2016) Fertilization-independent cell-fusion between the synergid and central cell in the polycomb mutant. Cell Struct Funct 41(2):121-5.

2015

Borg M, Berger F (2015) Chromatin remodelling during male gametophyte development.  Plant J 83(1):177-88.

Bowman JL, Araki T, Arteaga-Vazquez MA, et al. (2015) The naming of names: guidelines for gene nomenclature in Marchantia. Plant Cell Physiol 57(2):257-61.

Kawashima T, Berger F (2015) The central cell nuclear position at the micropylar end is maintained by the balance of F-actin dynamics, but dispensable for karyogamy in Arabidopsis. Plant Reprod 28(2):103-10.

Kawashima T, Lorkovic ZJ, Nishihama R, et al. (2015) Diversification of histone H2A variants during plant evolution. Trends Plant Sci 20(7):419-25.

Roscoe T, Guilleminot J, Bessoule JJ, et al. (2015) Complementation of Seed Maturation Phenotypes by Ectopic Expression of ABSCISSIC ACID INSENSITIVE3, FUSCA3 and LEAFY COTYLEDON2 in Arabidopsis. Plant Cell Physiol 56(6):1215-28.

2014

Kawashima T, Maruyama D, Shagirov M, Li J, Hamamura Y, Yelagandula R, Toyama Y, Berger F (2014) Dynamic F-actin movement is essential for fertilization in Arabidopsis thaliana. eLife 2014;3:e04501.

Kawashima T, Berger F (2014) Epigenetic reprogramming in plant sexual reproduction. Nat. Rev. Genet. 15(9):613-24.

Nie X, Wang H, Li J, Holec S, Berger F (2014) The HIRA complex that deposits the histone H3.3 is conserved in Arabidopsis and facilitates transcriptional dynamics. Biol Open 3(9):794-802.

Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan U, Nie X, Kawashima T, Groth M, Luger K, Jacobsen S, Berger F (2014) The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis. Cell 158(1):98-109.

Mori T., Igawa T., Tamiya G., Miyagishima S. and Berger F (2014) Gamete Attachment Requires GEX2 for Successful Fertilization in Arabidopsis. Current Biology 24, 170-175.

2013

Li J, Nie X, Tan JL, Berger F. (2013) Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis. Proc Natl Acad Sci U S A. 110:15479-84.

2012

Vu TM, Nakamura M, Calarco JP, Susaki D, Lim PQ, Kinoshita T, Higashiyama T, Martienssen RA, Berger F. (2012) RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development. 140:2953-60.

Calarco JP, Borges F, Donoghue MT, Van Ex F, Jullien PE, Lopes T, Gardner R, Berger F, Feijó JA, Becker JD, Martienssen RA. (2012) Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA. Cell 151 :194-205.

Jullien PJ, Susaki D, Yelagandula R, Higashiyama T, and Berger F (2012) DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana. Curr Biol 22: 1825-1830.

Wollmann H, Holec S, Alden K, Clarke ND, Jacques P-E, Berger F (2012). Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome. Plos Genetics, 10.1371/journal.pgen.1002658.

2011

Hamamura Y, Saito C, Awai C, Kurihara D, Miyawaki A, Nakagawa T, Kanaoka M, Sasaki N, Nakano A, Berger F, and Higashiyama T. (2011) Live-Cell Imaging Reveals the Dynamics of Two Sperm Cells during Double Fertilization in Arabidopsis thaliana. Curr Biol, 21: 497-502.

Chen Z, Higgins JD, Tan Li Hui J, Li J, Franklin FCH and Berger F (2011). Retinoblastoma protein is essential for early meiotic events in Arabidopsis EMBO J. 30: 744-755.

2010

Ingouff M, Rademacher S, Holec S, Šoljić L, Nie Xin, Readshaw A, Foo SH, Lahouze B, Sprunck S, Berger F (2010) Zygotic Resetting of the HISTONE 3 Variant Repertoire Participates in Epigenetic Reprogramming in Arabidopsis. Curr Biol 20: 2137-2143.

Wang, A, Garcia, D, Zhang, H, Feng, K, Chaudhury, A, Berger, F, Peacock, JW, Dennis, ES and Luo, M (2010). The VQ motif protein IKU1 controls endosperm growth and seed size in Arabidopsis. Plant J. 63: 670–679.

Aw, S.J, Hamamura, Y, Chen, Y, Schnittger, A and Berger F (2010) Sperm entry is sufficient to trigger division of the central cell but the paternal genome is required for endosperm development in Arabidopsis. Development, 137: 2683-2690.

Jullien, P. and Berger, F (2010) Parental dosage imbalance deregulates imprinting in Arabidopsis. Plos Genet 6: e1000885.

Andreuzza S,  Li J, Guitton A-E, Faure JF, Casanova S, Park J, Choi Y, Chen Z and Berger F (2010) DNA LIGASE I exerts a maternal effect on seed development in Arabidopsis thaliana. Development 137:73-81.

2009

Fitz Gerald JN, Hui PS, Berger F. (2009) Polycomb group-dependent imprinting of the actin regulator AtFH5 regulates morphogenesis in Arabidopsis thaliana. Development 136:3399-404.

Chen Z, Hafidh S, Poh SH ,Twell D and Berger F. (2009) Proliferation and cell fate establishment during Arabidopsis male gametogenesis depends on Retinoblastoma. PNAS 106:7257-7262.

Ingouff, M, Sakata, T, Li, J, Sprunck, S, Dresselhaus, T, and Berger, F. (2009). The two male gametes share equal ability to fertilize the egg cell in Arabidopsis thaliana. Curr Biol, 19: R19-20.

2008

Capron, A, Gourgues, M, Neiva, L S, Faure J-E, Berger, F, Pagnussat G, Anjali Krishnan, A, Alvarez-Mejiam C, Vielle-Calzada J-P, Lee, Y, Liu, B, and Sundaresan V (2008). Maternal Control of Male-Gamete Delivery in Arabidopsis Involves a Putative GPI-Anchored Protein Encoded by the LORELEI Gene. Plant Cell 20: 3038-3049.

Jullien, P.E., Mosquna, A., Ingouff, M., Sakata T., Ohad, N. and Berger, F. (2008) Retinoblastoma and its Binding Partner MSI1 Control Imprinting in Arabidopsis. Plos Biology 6: e94.

Rotman N, Gourgues M, Guitton A-E, Faure J-E and Berger, F. (2008). A dialogue between the sirène pathway in synergids and the fertilization independent seed pathway in the central cell controls male gamete release during double fertilization in Arabidopsis. Molecular Plant doi: 10.1093/mp/ssn023

FitzGerald J, Luo, M, Chaudhury A and Berger F. (2008) DNA Methylation Causes Predominant Maternal Controls of Plant Embryo Growth. Plos One 3(5): e2298. doi:10.1371/journal.pone.0002298.

Chen, Z, Tan Li Hui J, Ingouff M, Sundaresan V, Berger F (2008) The Chromatin Assembly Factor 1 regulates the cell cycle but not the cell fate during male gametogenesis in Arabidopsis thaliana. Development 135 : 65-73.

2007

Ingouff M, Hamamura Y, Gourgues M, Higashiyama T, Berger F (2007) Distinct dynamics of HISTONE3 variants between the two fertilization products in plants. Cur Biol 17: 1032-1037.

2006

Ingouff M, Jullien, PE, Berger F (2006) The female gametophyte and the endosperm control cell proliferation and differentiation of the seed coat in Arabidopsis. Plant Cell 18 : 3491-501.

Jullien P, Kinoshita T, Ohad N, Berger F (2006) Maintenance of DNA Methylation During the Arabidopsis Life Cycle is Essential for Parental Imprinting. Plant Cell 18:1360-1372.

Jullien P, Katz A, Oliva M, Ohad, N, Berger F (2006) Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. Curr. Biol. 16: 486-494.

2005

Luo M, Dennis ES, Berger F, Peacock J, Chaudhury A (2005) MINISEED3 (MINI3), a WRKY family gene, and IKU2, a LRR KINASE gene, are regulators of endosperm development and seed size in Arabidopsis. Proc Natl Acad Sci USA. 29:17531-17536.

Guitton A-E, Berger F (2005) Loss-of-function of MULTICOPYSUPPRESSOR OF IRA 1 produces non-viable parthenogenetic embryos in Arabidopsis. Curr. Biol. 15: 750-754.

Ingouff M, Haseloff J, Berger F (2005) Polycomb group genes control developmental timing of endosperm. Plant J. 42 : 663-674.

Ingouff M, FitzGerald JN, Guérin C, Robert N, Sørensen M, Van Damme D, Geelen D, Blanchoin L, Berger F  (2005) Plant formin AtFH5 is an evolutionarily conserved actin nucleator involved in cytokinesis. Nat. Cell Biol. 7 :374-380.

Rotman N, Durbarry A, Wardle A, Yang WC, Chaboud A, Faure J-E, Berger F, Twell D (2005) A Novel Class of MYB factors control sperm-cell formation in plants. Cur. Biol. 15, 244-248.

Garcia D, FitzGerald JN, Berger F (2005) Maternal control of integument cell elongation and zygotic control of endosperm growth are coordinated to determine seed size in arabidopsis. Plant Cell 17: 52-60.

2004

Vespa L, Vachon, G, Berger F, Perazza D, Faure J-D, Herzog M (2004) The immunophilin-interacting protein AtFIP37 is essential for plant development and is involved in trichome endoreduplication. Plant Physiol. 134: 1283-1292.

Guitton A-E, Page D, Chambrier P, Lionnet C, Jean-Emmanuel Faure J-E, Grossniklaus U, Berger F (2004) Identification of new members of Fertilisation Independent Seed Polycomb Group pathway involved in the control of seed development in Arabidopsis thaliana. Development 131: 2971-2981.

2003

Rotman N, Rozier F, Boavida L, Dumas C, Berger F, Faure JE (2003). Female control of male gamete delivery during fertilization in Arabidopsis thaliana. Curr. Biol. 13: 432-436.

Garcia D, Saingery V, Chambrier P, Mayer U, Jürgens G, Berger F (2003) Arabidopsis haiku mutants reveal new controls of seed size by endosperm. Plant Physiol. 131: 1661-1670.

2002

Sørensen, MB, Mayer U, Lukowitz W, Robert H, Chambrier P, Jürgens G, Somerville C, Lepiniec L, Berger F (2002) Cellularisation in the endosperm of Arabidopsis thaliana is coupled to mitosis and shares multiple components with cytokinesis. Development, 129: 5567-5576.

Despres B, Bouissonnie F, Wu HJ, Gomord V, Guilleminot J, Grellet F, Berger F, Delseny M, Devic M (2003) Three SAC1-like genes show overlapping patterns of expression in Arabidopsis but are remarkably silent during embryo development. Plant J. 34: 293-306.

Menand B, Desnos T, Nussaume L, Berger F, Bouchez D, Meyer C, Robaglia C (2002) Expression and disruption of the Arabidopsis TOR (target of rapamycin) gene. Proc Natl Acad Sci USA 99: 6422-6427.

Reviews and Book Chapters

Berger F, Vu TM, Li J, Chen B (2012) Hypothesis: Selection of Imprinted Genes is Driven by Silencing Deleterious Gene Activity in Somatic Tissues. Cold Spring Harb Symp Quant Biol. 77: 23-29

Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, Gorovsky MA, Hake SB, Hamkalo BA, Holec S, Jacobsen SE, Kamieniarz K, Khochbin S, Ladurner AG, Landsman D, Latham JA, Loppin B, Malik HS, Marzluff WF, Pehrson JR, Postberg J, Schneider R, Singh MB, Smith MM, Thompson E, Torres-Padilla ME, Tremethick DJ, Turner BM, Waterborg JH, Wollmann H, Yelagandula R, Zhu B, Henikoff S (2012) A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin 21: 5-7.

Li J, Berger F (2012) Tansley review. Endosperm, fodder for discoveries and mankind. New Phytologist 195: 290-305.

Holec S, Berger F (2012) Polycomb group complexes mediate developmental transitions in plants. Plant Physiol. 158:35-43.

Wollmann H, Berger F (2011) Epigenetic reprogramming during plant reproduction and seed development Curr Opin Plant Biol. 15 : 63-69.

Kawashima T, Berger F (2011) Green love talks; cell–cell communication during double fertilization in flowering plants. AOB doi: 10.1093/aobpla/plr015

Berger F, Twell D (2011) Germline specification and function in plants. Ann Rev in Plant Biol. 62:461-84

Berger F (2011) Imaging fertilization in flowering plants, not so abominable after all. J Exp Bot. 62: 1651-1658.

Jullien PE, Berger F (2010) DNA methylation reprogramming during plant sexual reproduction? Trends Genet 26:394-9

Rodrigues JC, Luo M, Berger F, Koltunow AM (2009) Polycomb group gene function in sexual and asexual seed development in angiosperms. Sex Plant Reprod

Ingouff M, Berger F (2009) Histone3 variants in plants. Chromosoma. DOI 10.1007/s00412-009-0237-1

Jullien PE, Berger F. (2009) Gamete-specific epigenetic mechanisms shape genomic imprinting. Curr Opin Plant Biol. 12:637-42.

Berger F, Chaudhury A (2009) Parental memories shape seeds. Trends Plant Sci. 14:550-6.

Berger F (2008). Editorial Overview. Semin Cell Dev Biol.19 :1-2

Dominguez M, Berger F (2008) Chromatin and the cell cycle meet in Madrid. Development 135:3475-80.

Jullien PE, Berger F (2008) Parental genomic imprinting in plants: significance for reproduction. Med Sci (8-9):753-757.

Berger F, Hamamura Y, Ingouff M, Higashiyama T (2008) Double-Fertilization caught in the act. Trends Plant Sciences.  13: 437-443.

Berger F (2008) Double fertilization from myth to reality Sex Plant Reprod 21:3-5.

Feil R, Berger F (2007) Convergent evolution of imprinting in plants and mammals. TIGS 23: 192-199.

Berger F, FitzGerald J, Ingouff M (2007) Arabidopsis as a model for understanding basics of endosperm development. in “Endosperm, a monography”, Eds O-A Olsen. Springer-Verlag

Berger F (2006) Endosperm development. In: ENCYCLOPEDIA OF LIFE SCIENCES. John Wiley & Sons, Ltd: Chichester www.els.net [DOI:10.1002/9780470015902.a0020098

Berger F, Grini P, Schnittger A (2006). Endosperm: an integrator of seed growth and development. Curr. Opin. Plant Biol 9: 664-670.

Guitton AE, Berger F (2005) Control of reproduction by Polycomb group (PcG) complexes in animals and plants. Int. J. Dev. Biol. 49 707-716.

Lepiniec L, Devic M, Berger F (2004) Genetic and molecular control of seed development in Arabidopsis. In Plant Functional Genomics  pp XX - YY

Berger F, Gaudin V (2003) Chromatin dynamics and Arabidopsis development. Chromosome Research, 11: 277-304.

Berger F (2003) Endosperm: the crossroad of seed development. Curr. Opin. Plant Biol. 6: 42-50.

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